ClinVar Miner

Submissions for variant NM_000722.4(CACNA2D1):c.2967-3C>A

gnomAD frequency: 0.00001  dbSNP: rs375733834
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV002442039 SCV002749158 likely benign Cardiovascular phenotype 2023-11-13 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Labcorp Genetics (formerly Invitae), Labcorp RCV003102929 SCV003512024 uncertain significance Brugada syndrome 2025-01-02 criteria provided, single submitter clinical testing This sequence change falls in intron 36 of the CACNA2D1 gene. It does not directly change the encoded amino acid sequence of the CACNA2D1 protein. It affects a nucleotide within the consensus splice site. This variant is present in population databases (rs375733834, gnomAD 0.03%). This variant has not been reported in the literature in individuals affected with CACNA2D1-related conditions. ClinVar contains an entry for this variant (Variation ID: 1798225). Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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