Total submissions: 2
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Gene |
RCV000430538 | SCV000515823 | likely pathogenic | not provided | 2022-07-28 | criteria provided, single submitter | clinical testing | Published functional studies demonstrate a damaging effect: V308A increases the sensitivity to acetylcholine and has a gain of function effect (Hoda et al., 2008); Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; This variant is associated with the following publications: (PMID: 12942156, 24395520, 22036597, 28102150, 28717674, 28488083, 26309560, 33284031, 19383498, 26147798, 32347641, 20301348, 26072248, 25717303, 33924731, 25969754, 31324802, 18456869) |
Invitae | RCV001382226 | SCV001580898 | pathogenic | Autosomal dominant nocturnal frontal lobe epilepsy | 2023-12-08 | criteria provided, single submitter | clinical testing | This sequence change replaces valine, which is neutral and non-polar, with alanine, which is neutral and non-polar, at codon 308 of the CHRNB2 protein (p.Val308Ala). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individuals with clinical features of nocturnal frontal lobe epilepsy (PMID: 18456869). It has also been observed to segregate with disease in related individuals. ClinVar contains an entry for this variant (Variation ID: 41035). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt CHRNB2 protein function with a negative predictive value of 80%. Experimental studies have shown that this missense change affects CHRNB2 function (PMID: 18456869). For these reasons, this variant has been classified as Pathogenic. |