ClinVar Miner

Submissions for variant NM_000834.5(GRIN2B):c.1665C>T (p.Ser555=)

gnomAD frequency: 0.26553  dbSNP: rs1805482
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Total submissions: 12
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Genome Diagnostics Laboratory, University Medical Center Utrecht RCV000615174 SCV000744080 benign Intellectual disability, autosomal dominant 6 2017-07-28 criteria provided, single submitter clinical testing
Athena Diagnostics RCV000711873 SCV000842281 benign not provided 2017-04-20 criteria provided, single submitter clinical testing
Ambry Genetics RCV002312127 SCV000846314 benign Inborn genetic diseases 2016-02-22 criteria provided, single submitter clinical testing This alteration is classified as benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Labcorp Genetics (formerly Invitae), Labcorp RCV001517088 SCV001725501 benign Intellectual disability, autosomal dominant 6; Developmental and epileptic encephalopathy, 27 2025-02-04 criteria provided, single submitter clinical testing
GeneDx RCV000711873 SCV001868040 benign not provided 2015-03-03 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV001701602 SCV001933975 benign Developmental and epileptic encephalopathy, 27 2021-08-10 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV000615174 SCV001933976 benign Intellectual disability, autosomal dominant 6 2021-08-10 criteria provided, single submitter clinical testing
Unidad de Genómica Garrahan, Hospital de Pediatría Garrahan RCV000117191 SCV005087494 benign not specified 2024-07-15 criteria provided, single submitter clinical testing This variant is classified as Benign based on local population frequency. This variant was detected in 65% of patients studied in a panel designed for Epileptic and Developmental Encephalopathy and Progressive Myoclonus Epilepsy. Number of patients: 60. Only high quality variants are reported.
Breakthrough Genomics, Breakthrough Genomics RCV000711873 SCV005233658 benign not provided criteria provided, single submitter not provided
Genetic Services Laboratory, University of Chicago RCV000117191 SCV000151355 likely benign not specified no assertion criteria provided clinical testing Likely benign based on allele frequency in 1000 Genomes Project or ESP global frequency and its presence in a patient with a rare or unrelated disease phenotype. NOT Sanger confirmed.
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen RCV000615174 SCV000733145 benign Intellectual disability, autosomal dominant 6 no assertion criteria provided clinical testing
Joint Genome Diagnostic Labs from Nijmegen and Maastricht, Radboudumc and MUMC+ RCV000117191 SCV001958816 benign not specified no assertion criteria provided clinical testing

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