ClinVar Miner

Submissions for variant NM_000834.5(GRIN2B):c.4241C>T (p.Ala1414Val)

gnomAD frequency: 0.00002  dbSNP: rs751107971
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV001698433 SCV000727765 likely benign not provided 2021-01-30 criteria provided, single submitter clinical testing
Invitae RCV001058730 SCV001223321 uncertain significance Intellectual disability, autosomal dominant 6; Developmental and epileptic encephalopathy, 27 2022-08-23 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt GRIN2B protein function. ClinVar contains an entry for this variant (Variation ID: 515602). This variant has not been reported in the literature in individuals affected with GRIN2B-related conditions. This variant is present in population databases (rs751107971, gnomAD 0.008%). This sequence change replaces alanine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 1414 of the GRIN2B protein (p.Ala1414Val).
Ambry Genetics RCV002331081 SCV002628638 likely benign Inborn genetic diseases 2020-03-28 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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