ClinVar Miner

Submissions for variant NM_001001557.4(GDF6):c.253C>T (p.Pro85Ser)

gnomAD frequency: 0.00002  dbSNP: rs766458579
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001232106 SCV001404652 uncertain significance Klippel-Feil syndrome 1, autosomal dominant; Isolated microphthalmia 4; Microphthalmia, isolated, with coloboma 6; Leber congenital amaurosis 17 2023-07-07 criteria provided, single submitter clinical testing This variant is present in population databases (rs766458579, gnomAD 0.01%). This sequence change replaces proline, which is neutral and non-polar, with serine, which is neutral and polar, at codon 85 of the GDF6 protein (p.Pro85Ser). This variant has not been reported in the literature in individuals affected with GDF6-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt GDF6 protein function. ClinVar contains an entry for this variant (Variation ID: 958860).
Ambry Genetics RCV002563772 SCV003610186 uncertain significance Inborn genetic diseases 2022-03-29 criteria provided, single submitter clinical testing The c.253C>T (p.P85S) alteration is located in exon 1 (coding exon 1) of the GDF6 gene. This alteration results from a C to T substitution at nucleotide position 253, causing the proline (P) at amino acid position 85 to be replaced by a serine (S). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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