Total submissions: 3
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Labcorp Genetics |
RCV002513180 | SCV003440900 | uncertain significance | Klippel-Feil syndrome 1, autosomal dominant; Isolated microphthalmia 4; Microphthalmia, isolated, with coloboma 6; Leber congenital amaurosis 17 | 2023-08-11 | criteria provided, single submitter | clinical testing | This sequence change replaces alanine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 199 of the GDF6 protein (p.Ala199Thr). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. This missense change has been observed in individual(s) with microphthalmia (PMID: 19864492, 23307924). ClinVar contains an entry for this variant (Variation ID: 30159). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt GDF6 protein function. Experimental studies have shown that this missense change affects GDF6 function (PMID: 19864492, 23307924). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. |
OMIM | RCV000023075 | SCV000044366 | pathogenic | Microphthalmia, isolated, with coloboma 6 | 2013-04-01 | no assertion criteria provided | literature only | |
OMIM | RCV000054524 | SCV000083002 | pathogenic | Leber congenital amaurosis 17 | 2013-04-01 | no assertion criteria provided | literature only |