ClinVar Miner

Submissions for variant NM_001005361.3(DNM2):c.2153G>A (p.Arg718Gln)

gnomAD frequency: 0.00001  dbSNP: rs753677038
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001038861 SCV001202360 uncertain significance Charcot-Marie-Tooth disease dominant intermediate B 2023-09-27 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with glutamine, which is neutral and polar, at codon 718 of the DNM2 protein (p.Arg718Gln). This variant is present in population databases (rs753677038, gnomAD 0.01%). This missense change has been observed in individual(s) with centronuclear myopathy (PMID: 25501959). ClinVar contains an entry for this variant (Variation ID: 837508). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) has been performed at Invitae for this missense variant, however the output from this modeling did not meet the statistical confidence thresholds required to predict the impact of this variant on DNM2 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GeneDx RCV001759734 SCV001987693 uncertain significance not provided 2020-08-26 criteria provided, single submitter clinical testing Reported in a patient with centronuclear myopathy; this patient also had a pathogenic variant in the DNM2 gene identified (Chen et al., 2015); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Missense variants in this gene are often considered pathogenic (Stenson et al., 2014); This variant is associated with the following publications: (PMID: 25501959)
Ambry Genetics RCV002427493 SCV002731247 uncertain significance Inborn genetic diseases 2021-06-22 criteria provided, single submitter clinical testing The p.R718Q variant (also known as c.2153G>A), located in coding exon 19 of the DNM2 gene, results from a G to A substitution at nucleotide position 2153. The arginine at codon 718 is replaced by glutamine, an amino acid with highly similar properties. This variant was detected in an individual with centronuclear myopathy, who also had a known pathogenic variant in DNM2 (Chen T et al. Neurol Sci, 2015 May;36:735-41). This amino acid position is highly conserved in available vertebrate species. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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