ClinVar Miner

Submissions for variant NM_001005373.4(LRSAM1):c.1043+1G>A

dbSNP: rs373571535
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001225536 SCV001397819 likely pathogenic Charcot-Marie-Tooth disease axonal type 2P 2019-07-24 criteria provided, single submitter clinical testing In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Donor and acceptor splice site variants typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in LRSAM1 are known to be pathogenic (PMID: 20865121). This variant has not been reported in the literature in individuals with LRSAM1-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change affects a donor splice site in intron 13 of the LRSAM1 gene. It is expected to disrupt RNA splicing and likely results in an absent or disrupted protein product.
GeneDx RCV003238847 SCV003936585 uncertain significance not provided 2022-12-28 criteria provided, single submitter clinical testing Canonical splice site variant in a gene or region of a gene for which loss of function is not a well-established mechanism of disease; Not observed at significant frequency in large population cohorts (gnomAD); Has not been previously published as pathogenic or benign to our knowledge; This variant is associated with the following publications: (PMID: 20865121)

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