ClinVar Miner

Submissions for variant NM_001005373.4(LRSAM1):c.917T>G (p.Leu306Arg)

gnomAD frequency: 0.00039  dbSNP: rs140151379
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000983889 SCV001131935 likely benign Charcot-Marie-Tooth disease axonal type 2P 2023-12-01 criteria provided, single submitter clinical testing
Illumina Laboratory Services, Illumina RCV000983889 SCV001329227 likely benign Charcot-Marie-Tooth disease axonal type 2P 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as likely benign is not then subjected to further curation. The score for this variant resulted in a classification of likely benign for this disease.
Mayo Clinic Laboratories, Mayo Clinic RCV002261248 SCV002541014 uncertain significance not provided 2021-09-14 criteria provided, single submitter clinical testing
Ambry Genetics RCV002372703 SCV002685756 uncertain significance Inborn genetic diseases 2020-11-12 criteria provided, single submitter clinical testing The p.L306R variant (also known as c.917T>G), located in coding exon 12 of the LRSAM1 gene, results from a T to G substitution at nucleotide position 917. The leucine at codon 306 is replaced by arginine, an amino acid with dissimilar properties. This amino acid position is well conserved in available vertebrate species. In addition, the in silico prediction for this alteration is inconclusive. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear. Based on the supporting evidence, this variant is unlikely to be causative of autosomal dominant Charcot-Marie-Tooth disease, type 2P; however, its contribution to the development of autosomal recessive Charcot-Marie-Tooth disease, type 2P is uncertain.

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