ClinVar Miner

Submissions for variant NM_001009944.3(PKD1):c.8593C>T (p.Arg2865Trp)

gnomAD frequency: 0.00024  dbSNP: rs370251642
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV005240747 SCV005885952 uncertain significance not specified 2025-02-18 criteria provided, single submitter clinical testing Variant summary: PKD1 c.8593C>T (p.Arg2865Trp) results in a non-conservative amino acid change in the encoded protein sequence. Three of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 0.00021 in 234074 control chromosomes. This frequency is not significantly higher than estimated for a pathogenic variant in PKD1 causing Polycystic Kidney Disease 1 (0.00021 vs 0.0005), allowing no conclusion about variant significance. c.8593C>T has been reported in the literature in individuals affected with clinical features of PKD1-related conditions (Rossetti_2012, Mallawaarachchi_2016, Saglia_2023). These report(s) do not provide unequivocal conclusions about association of the variant with Polycystic Kidney Disease 1. To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. The following publications have been ascertained in the context of this evaluation (PMID: 22383692, 27165007, 38012624). ClinVar contains an entry for this variant (Variation ID: 2582217). Based on the evidence outlined above, the variant was classified as uncertain significance.
Department of Pathology and Laboratory Medicine, Sinai Health System RCV003332923 SCV006055082 uncertain significance Polycystic kidney disease, adult type 2022-09-12 criteria provided, single submitter clinical testing
Immunogenetics and Transplant Biology Service, University Hospital "Città della Salute e della Scienza di Torino" RCV003332923 SCV004040461 uncertain significance Polycystic kidney disease, adult type 2023-07-03 no assertion criteria provided clinical testing

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