Total submissions: 4
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Gene |
RCV000681685 | SCV002562630 | pathogenic | not provided | 2023-05-30 | criteria provided, single submitter | clinical testing | Nonsense variant predicted to result in protein truncation or nonsense mediated decay in a gene for which loss-of-function is a known mechanism of disease; Not observed at significant frequency in large population cohorts (gnomAD); This variant is associated with the following publications: (PMID: 22508176, 31740684, 35177841, 30586318, 35783601) |
Eurofins- |
RCV003236587 | SCV003935072 | pathogenic | Polycystic kidney disease, adult type | 2022-10-07 | criteria provided, single submitter | clinical testing | |
Gharavi Laboratory, |
RCV000681685 | SCV000809132 | pathogenic | not provided | 2018-09-16 | no assertion criteria provided | research | |
Department of Pathology and Laboratory Medicine, |
RCV001292451 | SCV001480973 | pathogenic | Polycystic kidney disease | no assertion criteria provided | clinical testing | The PKD1 p.Arg3183X variant was identified in 2 of 1400 proband chromosomes (frequency: 0.001) from individuals or families with ADPKD (Audrezet 2012). The variant was also identified in ADPKD Mutation Database (definitely pathogenic). The variant was not identified in dbSNP, ClinVar, Clinvitae, GeneInsight-COGR, LOVD 3.0, PKD1-LOVD, databases. The variant was not identified in the following control databases: the 1000 Genomes Project, the NHLBI GO Exome Sequencing Project, the Exome Aggregation Consortium (August 8th 2016), or the Genome Aggregation Database (Feb 27, 2017). The c.9547C>T variant leads to a premature stop codon at position 3183, which is predicted to lead to a truncated or absent protein and loss of function. Loss of function variants of the PKD1 gene are an established mechanism of disease in ADPKD and is the type of variant expected to cause the disorder. In summary, based on the above information, this variant meets our laboratory’s criteria to be classified as pathogenic. |