ClinVar Miner

Submissions for variant NM_001018115.3(FANCD2):c.1519A>G (p.Met507Val)

gnomAD frequency: 0.00001  dbSNP: rs376708399
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000467801 SCV000547224 uncertain significance Fanconi anemia 2017-01-19 criteria provided, single submitter clinical testing In summary, this variant is a rare missense change that is not predicted to affect protein function. There is no indication that it causes disease, but the available evidence is currently insufficient to prove that conclusively. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function output the following: (SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0"). The valine amino acid residue is found in multiple mammalian species, suggesting that this missense change does not adversely affect protein function. These predictions have not been confirmed by published functional studies. This variant is present in population databases (rs376708399, ExAC 0.006%) but has not been reported in the literature in individuals with a FANCD2-related disease. This sequence change replaces methionine with valine at codon 507 of the FANCD2 protein (p.Met507Val). The methionine residue is moderately conserved and there is a small physicochemical difference between methionine and valine.
Fulgent Genetics, Fulgent Genetics RCV005033980 SCV005661253 uncertain significance Fanconi anemia complementation group D2 2024-06-12 criteria provided, single submitter clinical testing

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