ClinVar Miner

Submissions for variant NM_001018115.3(FANCD2):c.289G>A (p.Val97Ile)

gnomAD frequency: 0.00001  dbSNP: rs1480379325
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001054161 SCV001218463 uncertain significance Fanconi anemia 2022-10-31 criteria provided, single submitter clinical testing This sequence change replaces valine, which is neutral and non-polar, with isoleucine, which is neutral and non-polar, at codon 97 of the FANCD2 protein (p.Val97Ile). This variant is present in population databases (no rsID available, gnomAD 0.008%). This variant has not been reported in the literature in individuals affected with FANCD2-related conditions. This missense change has been observed to co-occur in individuals with a different variant in FANCD2 that has been determined to be pathogenic (Invitae), but the significance of this finding is unclear. ClinVar contains an entry for this variant (Variation ID: 850071). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt FANCD2 protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Fulgent Genetics, Fulgent Genetics RCV002481985 SCV002786247 uncertain significance Fanconi anemia complementation group D2 2021-12-24 criteria provided, single submitter clinical testing

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