ClinVar Miner

Submissions for variant NM_001024845.3(SLC6A9):c.116C>T (p.Thr39Met)

gnomAD frequency: 0.00005  dbSNP: rs200545935
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 1
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002001961 SCV002215794 uncertain significance Atypical glycine encephalopathy 2021-03-31 criteria provided, single submitter clinical testing This variant has not been reported in the literature in individuals with SLC6A9-related conditions. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Deleterious"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). This variant is present in population databases (rs200545935, ExAC 0.02%). This sequence change replaces threonine with methionine at codon 112 of the SLC6A9 protein (p.Thr112Met). The threonine residue is highly conserved and there is a moderate physicochemical difference between threonine and methionine.

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.