ClinVar Miner

Submissions for variant NM_001025603.2(RFX5):c.385C>T (p.Pro129Ser)

gnomAD frequency: 0.00001  dbSNP: rs1486774899
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001347853 SCV001542133 uncertain significance MHC class II deficiency 2021-06-14 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be disruptive, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. This variant has not been reported in the literature in individuals with RFX5-related conditions. This variant is not present in population databases (ExAC no frequency). This sequence change replaces proline with serine at codon 129 of the RFX5 protein (p.Pro129Ser). The proline residue is highly conserved and there is a moderate physicochemical difference between proline and serine.

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