ClinVar Miner

Submissions for variant NM_001040142.2(SCN2A):c.386+2T>C (rs1553564400)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000522079 SCV000617212 pathogenic not provided 2015-11-01 criteria provided, single submitter clinical testing The c.386+2T>C pathogenic variant in the SCN2A gene has not been reported previously as a pathogenic variant nor as a benign variant, to our knowledge. This splice site variant destroys the canonical splice donor site in intron 3. It is predicted to cause abnormal gene splicing, either leading to an abnormal message that is subject to nonsense-mediated mRNA decay, or to an abnormal protein product if the message is used for protein translation. The c.386+2T>C variant was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. We interpret c.386+2T>C as a pathogenic variant

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