ClinVar Miner

Submissions for variant NM_001042432.2(CLN3):c.46+1G>A

dbSNP: rs1057516343
Minimum review status: Collection method:
Minimum conflict level:
ClinVar version:
Total submissions: 3
Download table as spreadsheet
Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Counsyl RCV000409491 SCV000485500 likely pathogenic Neuronal ceroid lipofuscinosis 3 2015-12-23 criteria provided, single submitter clinical testing
Invitae RCV001379345 SCV001577131 likely pathogenic Neuronal ceroid lipofuscinosis 2023-12-01 criteria provided, single submitter clinical testing This sequence change affects a donor splice site in intron 2 of the CLN3 gene. It is expected to disrupt RNA splicing. Variants that disrupt the donor or acceptor splice site typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in CLN3 are known to be pathogenic (PMID: 9311735, 28542676). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with CLN3-related conditions. ClinVar contains an entry for this variant (Variation ID: 370243). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic.
Baylor Genetics RCV000409491 SCV004214335 likely pathogenic Neuronal ceroid lipofuscinosis 3 2023-05-27 criteria provided, single submitter clinical testing

The information on this website is not intended for direct diagnostic use or medical decision-making without review by a genetics professional. Individuals should not change their health behavior solely on the basis of information contained on this website. Neither the University of Utah nor the National Institutes of Health independently verfies the submitted information. If you have questions about the information contained on this website, please see a health care professional.