ClinVar Miner

Submissions for variant NM_001042492.3(NF1):c.5855G>A (p.Trp1952Ter)

dbSNP: rs1567615766
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
ARUP Laboratories, Molecular Genetics and Genomics, ARUP Laboratories RCV000757561 SCV000885847 pathogenic not provided 2017-12-15 criteria provided, single submitter clinical testing The NF1 c.5855G>A; p.Trp1952Ter variant (also known as c.5792G>A; p.Trp1931Ter) is reported in at least one individual that fulfilled NIH criteria for a diagnosis of NF1 (Lee 2006). The variant is not reported in the ClinVar database, in the dbSNP variant database, or in the general population-based databases (Exome Variant Server, Genome Aggregation Database). This variant introduces a premature termination codon and is predicted to result in a truncated protein or mRNA subject to non-sense mediated decay. Considering available information, this variant is classified as pathogenic. References: Lee MJ et al. Identification of forty-five novel and twenty-three known NF1 mutations in Chinese patients with neurofibromatosis type 1. Hum Mutat. 2006 Aug;27(8):832.
Labcorp Genetics (formerly Invitae), Labcorp RCV003495182 SCV004296785 pathogenic Neurofibromatosis, type 1 2023-09-10 criteria provided, single submitter clinical testing For these reasons, this variant has been classified as Pathogenic. This sequence change creates a premature translational stop signal (p.Trp1931*) in the NF1 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in NF1 are known to be pathogenic (PMID: 10712197, 23913538). This variant is not present in population databases (gnomAD no frequency). This premature translational stop signal has been observed in individual(s) with neurofibromatosis type I (PMID: 16835897). ClinVar contains an entry for this variant (Variation ID: 618754).
Juno Genomics, Hangzhou Juno Genomics, Inc RCV003495182 SCV005416681 pathogenic Neurofibromatosis, type 1 criteria provided, single submitter clinical testing PVS1+PM2_Supporting+PS4_Supporting+PP4

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