ClinVar Miner

Submissions for variant NM_001042492.3(NF1):c.6412C>T (p.Gln2138Ter)

dbSNP: rs2069691114
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001217579 SCV001389425 pathogenic Neurofibromatosis, type 1 2023-12-31 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Gln2117*) in the NF1 gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in NF1 are known to be pathogenic (PMID: 10712197, 23913538). This variant is not present in population databases (gnomAD no frequency). This premature translational stop signal has been observed in individual(s) with Neurofibromatosis type 1 and breast cancer (PMID: 28529006, 30530636). ClinVar contains an entry for this variant (Variation ID: 946672). Studies have shown that this premature translational stop signal is associated with inconclusive levels of altered splicing (Invitae). For these reasons, this variant has been classified as Pathogenic.
Ambry Genetics RCV002365983 SCV002657299 pathogenic Hereditary cancer-predisposing syndrome; Cardiovascular phenotype 2018-12-26 criteria provided, single submitter clinical testing The p.Q2117* pathogenic mutation (also known as c.6349C>T), located in coding exon 41 of the NF1 gene, results from a C to T substitution at nucleotide position 6349. This changes the amino acid from a glutamine to a stop codon within coding exon 41. This mutation was previously described in an individual with clinical and molecular diagnosis of neurofibromatosis type 1 (Paulo P et al. J Mol Diagn, 2017 07;19:502-513). In addition to the clinical data presented in the literature, this alteration is expected to result in loss of function by premature protein truncation or nonsense-mediated mRNA decay. As such, this alteration is interpreted as a disease-causing mutation.

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