ClinVar Miner

Submissions for variant NM_001079802.2(FKTN):c.290C>G (p.Ser97Cys)

dbSNP: rs1453857604
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV002439811 SCV002746767 uncertain significance Cardiovascular phenotype 2022-01-17 criteria provided, single submitter clinical testing The p.S97C variant (also known as c.290C>G), located in coding exon 3 of the FKTN gene, results from a C to G substitution at nucleotide position 290. The serine at codon 97 is replaced by cysteine, an amino acid with dissimilar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.
Labcorp Genetics (formerly Invitae), Labcorp RCV005098334 SCV005772875 uncertain significance Walker-Warburg congenital muscular dystrophy 2024-08-27 criteria provided, single submitter clinical testing This sequence change replaces serine, which is neutral and polar, with cysteine, which is neutral and slightly polar, at codon 97 of the FKTN protein (p.Ser97Cys). This variant is not present in population databases (gnomAD no frequency). This variant has not been reported in the literature in individuals affected with FKTN-related conditions. ClinVar contains an entry for this variant (Variation ID: 1797561). Invitae Evidence Modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) indicates that this missense variant is not expected to disrupt FKTN protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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