ClinVar Miner

Submissions for variant NM_001081.4(CUBN):c.4129C>T (p.Arg1377Cys)

gnomAD frequency: 0.00007  dbSNP: rs763563422
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002051279 SCV002108487 uncertain significance Imerslund-Grasbeck syndrome 2021-02-13 criteria provided, single submitter clinical testing This variant is present in population databases (rs763563422, ExAC 0.01%). In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated, but these predictions have not been confirmed by published functional studies and their clinical significance is uncertain. This variant has not been reported in the literature in individuals with CUBN-related conditions. This sequence change replaces arginine with cysteine at codon 1377 of the CUBN protein (p.Arg1377Cys). The arginine residue is weakly conserved and there is a large physicochemical difference between arginine and cysteine.
Fulgent Genetics, Fulgent Genetics RCV002482430 SCV002788592 uncertain significance Imerslund-Grasbeck syndrome type 1; Proteinuria, chronic benign 2021-10-27 criteria provided, single submitter clinical testing
Ambry Genetics RCV004611888 SCV005104782 uncertain significance Inborn genetic diseases 2024-05-12 criteria provided, single submitter clinical testing The c.4129C>T (p.R1377C) alteration is located in exon 28 (coding exon 28) of the CUBN gene. This alteration results from a C to T substitution at nucleotide position 4129, causing the arginine (R) at amino acid position 1377 to be replaced by a cysteine (C). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.

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