ClinVar Miner

Submissions for variant NM_001083962.2(TCF4):c.124A>G (p.Ser42Gly)

dbSNP: rs796053423
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000189728 SCV000243376 uncertain significance not provided 2014-02-06 criteria provided, single submitter clinical testing p.Ser42Gly (AGT>GGT): c.124 A>G in exon 3 of the TCF4 gene (NM_001083962.1). The Ser42Gly missense change in the TCF4 gene has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. It was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. This variant is a non-conservative amino acid substitution of a polar Serine residue with a non-polar Glycine residue at a position that is conserved across species. However, in silico analysis predicts this variant likely has a benign effect on the protein structure/function. Therefore, based on the currently available information, it is unclear whether Ser42Gly is a disease-causing mutation or a rare benign variant. The variant is found in EPILEPSY panel(s).
Baylor Genetics RCV001336173 SCV001529495 uncertain significance Pitt-Hopkins syndrome 2018-08-22 criteria provided, single submitter clinical testing This variant was determined to be of uncertain significance according to ACMG Guidelines, 2015 [PMID:25741868].

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