ClinVar Miner

Submissions for variant NM_001099922.3(ALG13):c.2624G>A (p.Ser875Asn)

dbSNP: rs757522953
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001339089 SCV001532809 uncertain significance Developmental and epileptic encephalopathy, 36 2022-03-12 criteria provided, single submitter clinical testing This sequence change replaces serine, which is neutral and polar, with asparagine, which is neutral and polar, at codon 875 of the ALG13 protein (p.Ser875Asn). This variant is present in population databases (no rsID available, gnomAD 0.001%). This variant has not been reported in the literature in individuals affected with ALG13-related conditions. ClinVar contains an entry for this variant (Variation ID: 1036132). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Tolerated"; PolyPhen-2: "Benign"; Align-GVGD: "Class C0". The asparagine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Oxford Medical Genetics Laboratories, Oxford University Hospitals NHS Foundation Trust RCV001339089 SCV003853447 uncertain significance Developmental and epileptic encephalopathy, 36 2023-03-23 criteria provided, single submitter clinical testing

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