ClinVar Miner

Submissions for variant NM_001101.5(ACTB):c.124-3C>T

gnomAD frequency: 0.00002  dbSNP: rs1189379541
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV000701659 SCV000830471 uncertain significance Baraitser-Winter syndrome 1 2023-09-21 criteria provided, single submitter clinical testing In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. This sequence change falls in intron 2 of the ACTB gene. It does not directly change the encoded amino acid sequence of the ACTB protein. It affects a nucleotide within the consensus splice site. This variant is present in population databases (no rsID available, gnomAD 0.009%). This variant has not been reported in the literature in individuals affected with ACTB-related conditions. ClinVar contains an entry for this variant (Variation ID: 578597). Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant is not likely to affect RNA splicing.
Ambry Genetics RCV002533630 SCV003564108 likely benign Inborn genetic diseases 2021-05-25 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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