ClinVar Miner

Submissions for variant NM_001111125.3(IQSEC2):c.3548C>T (p.Pro1183Leu)

gnomAD frequency: 0.00001  dbSNP: rs1302692296
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000498854 SCV000590676 uncertain significance not provided 2017-06-29 criteria provided, single submitter clinical testing The P1183L variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. The P1183L variant is not observed in large population cohorts (Lek et al., 2016; 1000 Genomes Consortium et al., 2015; Exome Variant Server). This variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties. This substitution occurs at a position that is conserved in mammals; however, missense variants in nearby residues have not been reported in the Human Gene Mutation Database in association with IQSEC2-related disorders (Stenson et al., 2014). In silico analysis is inconsistent in its predictions as to whether or not the variant is damaging to the protein structure/function.
Labcorp Genetics (formerly Invitae), Labcorp RCV005091068 SCV005804570 likely benign Intellectual disability, X-linked 1 2024-12-17 criteria provided, single submitter clinical testing

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