ClinVar Miner

Submissions for variant NM_001127671.2(LIFR):c.2336G>T (p.Gly779Val)

dbSNP: rs1404206532
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001365604 SCV001561880 likely pathogenic not provided 2023-07-03 criteria provided, single submitter clinical testing This missense change has been observed in individuals with Stuve-Wiedemann syndrome (PMID: 20447141). It has also been observed to segregate with disease in related individuals. In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be tolerated. ClinVar contains an entry for this variant (Variation ID: 1056730). This variant is not present in population databases (gnomAD no frequency). This sequence change replaces glycine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 779 of the LIFR protein (p.Gly779Val).

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