ClinVar Miner

Submissions for variant NM_001127713.1(ATL1):c.84A>G (p.Pro28=) (rs35014209)

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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000116421 SCV000167051 benign not specified 2013-12-30 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Illumina Clinical Services Laboratory,Illumina RCV000020724 SCV000386879 benign Hereditary spastic paraplegia 3A 2018-01-12 criteria provided, single submitter clinical testing This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Athena Diagnostics Inc RCV000576658 SCV000677511 benign Hereditary spastic paraplegia 3A; Hereditary sensory neuropathy type 1D 2017-04-30 criteria provided, single submitter clinical testing
Invitae RCV000020724 SCV001000491 benign Hereditary spastic paraplegia 3A 2019-12-31 criteria provided, single submitter clinical testing
GeneReviews RCV000020724 SCV000041297 benign Hereditary spastic paraplegia 3A 2010-09-21 no assertion criteria provided curation Converted during submission to Benign.
Genetic Services Laboratory,University of Chicago RCV000116421 SCV000150346 likely benign not specified no assertion criteria provided clinical testing Likely benign based on allele frequency in 1000 Genomes Project or ESP global frequency and its presence in a patient with a rare or unrelated disease phenotype. NOT Sanger confirmed.

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