ClinVar Miner

Submissions for variant NM_001128425.1(MUTYH):c.1186G>A (p.Gly396Ser) (rs1064795219)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000481734 SCV000570829 likely pathogenic not provided 2018-04-12 criteria provided, single submitter clinical testing This variant is denoted MUTYH c.1186G>A at the cDNA level, p.Gly396Ser (G396S) at the protein level, and results in the change of a Glycine to a Serine (GGT>AGT). Using alternate nomenclature, this variant would be defined as MUTYH 1144G>A (Gly382Ser). This variant has not, to our knowledge, been published in the literature as pathogenic or benign. MUTYH Gly396Ser was not observed in large population cohorts (Lek 2016). MUTYH Gly396Ser is located in the Nudix hydrolase domain (Ruggieri 2013). Protein-based in silico analysis, which includes protein predictors and evolutionary conservation, supports a deleterious effect. In addition, this variant occurs at the final nucleotide of its exon, and multiple splicing models predict it may destroy the nearby natural splice donor site. However, in the absence of RNA or functional studies, the actual effect of this variant is unknown. Finally, this variant occurs at the same residue as the common pathogenic variant MUTYH Gly396Asp, another non-conservative amino acid substitution. Based on the currently available evidence, we consider MUTYH Gly396Ser to be a likely pathogenic variant. Of note, MUTYH-Associated Polyposis (MAP) is a recessive condition associated with two pathogenic variants on opposite chromosomes in MUTYH.

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