ClinVar Miner

Submissions for variant NM_001130144.3(LTBP3):c.2204G>A (p.Arg735His)

gnomAD frequency: 0.00001  dbSNP: rs757613107
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001879520 SCV002137771 uncertain significance Brachyolmia-amelogenesis imperfecta syndrome 2022-08-23 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with histidine, which is basic and polar, at codon 735 of the LTBP3 protein (p.Arg735His). The frequency data for this variant in the population databases is considered unreliable, as metrics indicate poor data quality at this position in the gnomAD database. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. ClinVar contains an entry for this variant (Variation ID: 1375133). This variant has not been reported in the literature in individuals affected with LTBP3-related conditions.
Ambry Genetics RCV003375397 SCV004096763 uncertain significance Inborn genetic diseases 2023-06-17 criteria provided, single submitter clinical testing The p.R735H variant (also known as c.2204G>A), located in coding exon 15 of the LTBP3 gene, results from a G to A substitution at nucleotide position 2204. The arginine at codon 735 is replaced by histidine, an amino acid with highly similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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