ClinVar Miner

Submissions for variant NM_001130144.3(LTBP3):c.430G>A (p.Ala144Thr)

dbSNP: rs181842110
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV002013286 SCV002294509 uncertain significance Brachyolmia-amelogenesis imperfecta syndrome 2023-08-27 criteria provided, single submitter clinical testing This sequence change replaces alanine, which is neutral and non-polar, with threonine, which is neutral and polar, at codon 144 of the LTBP3 protein (p.Ala144Thr). This variant is present in population databases (rs181842110, gnomAD 0.006%). This variant has not been reported in the literature in individuals affected with LTBP3-related conditions. ClinVar contains an entry for this variant (Variation ID: 1500115). Algorithms developed to predict the effect of missense changes on protein structure and function output the following: SIFT: "Not Available"; PolyPhen-2: "Benign"; Align-GVGD: "Not Available". The threonine amino acid residue is found in multiple mammalian species, which suggests that this missense change does not adversely affect protein function. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002331600 SCV002626779 uncertain significance Inborn genetic diseases 2021-07-18 criteria provided, single submitter clinical testing The p.A144T variant (also known as c.430G>A), located in coding exon 2 of the LTBP3 gene, results from a G to A substitution at nucleotide position 430. The alanine at codon 144 is replaced by threonine, an amino acid with similar properties. This amino acid position is conserved. In addition, this alteration is predicted to be tolerated by in silico analysis. Since supporting evidence is limited at this time, the clinical significance of this alteration remains unclear.

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