ClinVar Miner

Submissions for variant NM_001130438.3(SPTAN1):c.2888C>T (p.Thr963Met)

gnomAD frequency: 0.00006  dbSNP: rs375623472
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Total submissions: 6
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000189444 SCV000243084 likely benign not specified 2017-12-06 criteria provided, single submitter clinical testing This variant is considered likely benign or benign based on one or more of the following criteria: it is a conservative change, it occurs at a poorly conserved position in the protein, it is predicted to be benign by multiple in silico algorithms, and/or has population frequency not consistent with disease.
Invitae RCV001058848 SCV001223444 benign Early infantile epileptic encephalopathy with suppression bursts 2023-11-13 criteria provided, single submitter clinical testing
Athena Diagnostics Inc RCV001288013 SCV001474800 likely benign not provided 2020-01-10 criteria provided, single submitter clinical testing
Genome-Nilou Lab RCV001808485 SCV002056650 benign Developmental and epileptic encephalopathy, 5 2021-07-15 criteria provided, single submitter clinical testing
Revvity Omics, Revvity RCV001288013 SCV003822687 uncertain significance not provided 2019-05-29 criteria provided, single submitter clinical testing
Ambry Genetics RCV003258690 SCV003948728 likely benign Inborn genetic diseases 2023-05-31 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.

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