Total submissions: 2
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Gene |
RCV000189533 | SCV000243176 | likely pathogenic | not provided | 2014-06-13 | criteria provided, single submitter | clinical testing | p.Asp2300Val (GAC>GTC): c.6899 A>T in exon 53 of the SPTAN1 gene (NM_001130438.2) The D2300V variant has not been published as a mutation, nor has it been reported as a benign polymorphism to our knowledge. It was not observed in approximately 6,500 individuals of European and African American ancestry in the NHLBI Exome Sequencing Project, indicating it is not a common benign variant in these populations. The D2300V variant is a non-conservative amino acid substitution, which is likely to impact secondary protein structure as these residues differ in polarity, charge, size and/or other properties. This substitution occurs at a position that is conserved across species, and in silico analysis predicts this variant is probably damaging to the protein structure/function. However, missense mutations have not been reported in this region of the protein in association with epilepsy. Therefore, based on the currently available information, it is likely this variant is a pathogenic mutation; however, the possibility that it is a benign variant cannot be completely excluded. The variant is found in EPILEPSY panel(s). |
Genomics England Pilot Project, |
RCV001542587 | SCV001760229 | likely pathogenic | Developmental and epileptic encephalopathy, 5 | no assertion criteria provided | clinical testing |