ClinVar Miner

Submissions for variant NM_001130987.2(DYSF):c.4254del (p.Ile1419fs)

dbSNP: rs398123786
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001925072 SCV002174842 pathogenic Qualitative or quantitative defects of dysferlin 2023-10-09 criteria provided, single submitter clinical testing This sequence change creates a premature translational stop signal (p.Ile1401Serfs*47) in the DYSF gene. It is expected to result in an absent or disrupted protein product. Loss-of-function variants in DYSF are known to be pathogenic (PMID: 17698709, 20301480). This variant is present in population databases (rs761906044, gnomAD 0.02%). This premature translational stop signal has been observed in individual(s) with limb-girdle muscular dystrophy (PMID: 17698709, 26088049, 30107846). ClinVar contains an entry for this variant (Variation ID: 1402261). For these reasons, this variant has been classified as Pathogenic.
Baylor Genetics RCV003464217 SCV004194234 pathogenic Miyoshi muscular dystrophy 1 2023-08-10 criteria provided, single submitter clinical testing
CeGaT Center for Human Genetics Tuebingen RCV003886531 SCV004703570 pathogenic not provided 2024-01-01 criteria provided, single submitter clinical testing DYSF: PVS1, PM3:Strong, PM2
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV004690166 SCV005185417 pathogenic Autosomal recessive limb-girdle muscular dystrophy 2024-05-07 criteria provided, single submitter clinical testing Variant summary: DYSF c.4200delC (p.Ile1401SerfsX47) results in a premature termination codon, predicted to cause a truncation of the encoded protein or absence of the protein due to nonsense mediated decay, which are commonly known mechanisms for disease. The variant allele was found at a frequency of 1.6e-05 in 250638 control chromosomes (gnomAD). c.4200delC has been reported in the literature in individuals affected with Limb-Girdle Muscular Dystrophy, Autosomal Recessive (e.g. Yu_2017, Zhong_2021). To our knowledge, no experimental evidence demonstrating an impact on protein function has been reported. The following publications have been ascertained in the context of this evaluation (PMID: 28403181, 34559919). ClinVar contains an entry for this variant (Variation ID: 1402261). Based on the evidence outlined above, the variant was classified as pathogenic.

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