ClinVar Miner

Submissions for variant NM_001130987.2(DYSF):c.6125G>A (p.Gly2042Asp)

dbSNP: rs1395588065
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001064810 SCV001229732 pathogenic Qualitative or quantitative defects of dysferlin 2023-12-14 criteria provided, single submitter clinical testing This sequence change replaces glycine, which is neutral and non-polar, with aspartic acid, which is acidic and polar, at codon 2003 of the DYSF protein (p.Gly2003Asp). This variant is not present in population databases (gnomAD no frequency). This missense change has been observed in individual(s) with DYSF-related conditions (PMID: 33610424; Invitae). In at least one individual the data is consistent with being in trans (on the opposite chromosome) from a pathogenic variant. ClinVar contains an entry for this variant (Variation ID: 858838). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt DYSF protein function with a positive predictive value of 95%. For these reasons, this variant has been classified as Pathogenic.
Natera, Inc. RCV001836103 SCV002080347 uncertain significance Autosomal recessive limb-girdle muscular dystrophy type 2B 2020-08-31 no assertion criteria provided clinical testing

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