ClinVar Miner

Submissions for variant NM_001134363.3(RBM20):c.2764G>A (p.Val922Met)

gnomAD frequency: 0.00002  dbSNP: rs947100716
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV000815233 SCV000955681 uncertain significance Dilated cardiomyopathy 1DD 2023-12-10 criteria provided, single submitter clinical testing This sequence change replaces valine, which is neutral and non-polar, with methionine, which is neutral and non-polar, at codon 922 of the RBM20 protein (p.Val922Met). This variant is present in population databases (no rsID available, gnomAD 0.002%). This variant has not been reported in the literature in individuals affected with RBM20-related conditions. ClinVar contains an entry for this variant (Variation ID: 658408). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt RBM20 protein function with a negative predictive value of 95%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Ambry Genetics RCV002433983 SCV002752268 likely benign Cardiovascular phenotype 2021-03-25 criteria provided, single submitter clinical testing This alteration is classified as likely benign based on a combination of the following: seen in unaffected individuals, population frequency, intact protein function, lack of segregation with disease, co-occurrence, RNA analysis, in silico models, amino acid conservation, lack of disease association in case-control studies, and/or the mechanism of disease or impacted region is inconsistent with a known cause of pathogenicity.
Mayo Clinic Laboratories, Mayo Clinic RCV003480861 SCV004225329 uncertain significance not provided 2022-09-21 criteria provided, single submitter clinical testing BP4
GeneDx RCV003480861 SCV005335071 uncertain significance not provided 2023-05-31 criteria provided, single submitter clinical testing Has not been previously published as pathogenic or benign to our knowledge; Not observed at significant frequency in large population cohorts (gnomAD); In silico analysis supports that this missense variant does not alter protein structure/function
Department of Pathology and Laboratory Medicine, Sinai Health System RCV000815233 SCV006052661 uncertain significance Dilated cardiomyopathy 1DD 2021-11-15 criteria provided, single submitter research

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