Total submissions: 3
| Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
|---|---|---|---|---|---|---|---|---|
| Illumina Laboratory Services, |
RCV001124686 | SCV001283670 | uncertain significance | Desbuquois dysplasia 1 | 2018-01-13 | criteria provided, single submitter | clinical testing | This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score, this variant could not be ruled out of causing disease and therefore its association with disease required further investigation. A literature search was performed for the gene, cDNA change, and amino acid change (if applicable). No publications were found based on this search. This variant was therefore classified as a variant of unknown significance for this disease. |
| ARUP Laboratories, |
RCV001811666 | SCV002048115 | uncertain significance | not provided | 2020-11-20 | criteria provided, single submitter | clinical testing | The CANT1 c.119G>A; p.Arg40His variant (rs375819727), to our knowledge, is not reported in the medical literature but is reported in ClinVar (Variation ID: 890249). This variant is found on only seven chromosomes (7/239406 alleles) in the Genome Aggregation Database. The arginine at codon 40 is moderately conserved, and computational analyses are uncertain whether this variant is neutral or deleterious (REVEL: 0.560). Due to limited information, the clinical significance of the p.Arg40His variant is uncertain at this time. |
| Ambry Genetics | RCV002556701 | SCV003536807 | uncertain significance | Inborn genetic diseases | 2022-05-25 | criteria provided, single submitter | clinical testing | The c.119G>A (p.R40H) alteration is located in exon 2 (coding exon 1) of the CANT1 gene. This alteration results from a G to A substitution at nucleotide position 119, causing the arginine (R) at amino acid position 40 to be replaced by a histidine (H). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear. |