ClinVar Miner

Submissions for variant NM_001163809.2(WDR81):c.2567C>T (p.Pro856Leu)

gnomAD frequency: 0.00007  dbSNP: rs587776906
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Total submissions: 5
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV001650842 SCV001871146 pathogenic not provided 2024-02-02 criteria provided, single submitter clinical testing Published functional studies demonstrate impaired autophagic clearance of protein aggregates and maintenance of cell viability (PMID: 33730050); In silico analysis supports that this missense variant has a deleterious effect on protein structure/function; Not observed at significant frequency in large population cohorts (gnomAD); This variant is associated with the following publications: (PMID: 28969387, 22686558, 16371500, 33996189, 33724704, 34338917, 21885617, 33730050)
Fulgent Genetics, Fulgent Genetics RCV002490408 SCV002797677 likely pathogenic Cerebellar ataxia, intellectual disability, and dysequilibrium syndrome 2; Hydrocephalus, congenital, 3, with brain anomalies 2022-03-29 criteria provided, single submitter clinical testing
Women's Health and Genetics/Laboratory Corporation of America, LabCorp RCV000024315 SCV004020809 pathogenic Cerebellar ataxia, intellectual disability, and dysequilibrium syndrome 2 2023-06-13 criteria provided, single submitter clinical testing Variant summary: WDR81 c.2567C>T (p.Pro856Leu) results in a non-conservative amino acid change in the encoded protein sequence. Five of five in-silico tools predict a damaging effect of the variant on protein function. The variant allele was found at a frequency of 1.3e-05 in 154980 control chromosomes (gnomAD). c.2567C>T has been reported in the literature in the homozygous state in six siblings affected with Cerebellar Ataxia, Intellectual Disability, And Dysequilibrium Syndrome 2 (CAMRQ2) from a large consanguineous Turkish family (Gulsuner_2011). The variant was found to segregate with the disease phenotype in this kindred, where over 100 family members spanning 5 generations were sequenced. These data indicate that the variant is very likely to be associated with disease. The following publication has been ascertained in the context of this evaluation (PMID: 21885617). Three submitters have provided clinical-significance assessments for this variant to ClinVar after 2014 and all classified the variant as pathogenic (n=1)/likely pathogenic (n=2). Based on the evidence outlined above, the variant was classified as pathogenic.
OMIM RCV000024315 SCV000045606 pathogenic Cerebellar ataxia, intellectual disability, and dysequilibrium syndrome 2 2011-12-01 no assertion criteria provided literature only
New York Genome Center RCV001255004 SCV001431093 likely pathogenic Intellectual disability 2020-03-09 no assertion criteria provided clinical testing

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