ClinVar Miner

Submissions for variant NM_001165963.4(SCN1A):c.3850T>C (p.Trp1284Arg)

dbSNP: rs796053001
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
GeneDx RCV000188932 SCV000242563 likely pathogenic not provided 2017-07-13 criteria provided, single submitter clinical testing p.Trp1284Arg (TGG>CGG): c.3850 T>C in exon 19 of the SCN1A gene (NM_001165963.1) The Trp1284Arg missense change has not been published as pathogenic, nor has it been reported as a benign polymorphism to our knowledge. It was not observed in approximately 6,500 individuals of European and African American ancestry in an external variant database, indicating it is not a common benign variant in these populations. This variant is a non-conservative amino acid substitution of an uncharged, non-polar Tryptophan residue with a positively charged Arginine residue. The variant alters a highly conserved position in the S3 subunit in the third transmembrane domain of the protein. A different amino acid substitution at this position (Trp1284Ser) has been published in association with Dravet syndrome. Additionally, in silico analysis predicts this variant is probably damaging to the protein structure/function. Therefore, based on the currently available information, Trp1284Arg is a strong candidate for a pathogenic variant, although the possibility that it is a benign variant cannot be excluded.
Centre for Inherited Metabolic Diseases, Karolinska University Hospital RCV001375621 SCV001572543 likely pathogenic Severe myoclonic epilepsy in infancy 2021-04-25 criteria provided, single submitter clinical testing
Mendelics RCV002247609 SCV002519018 pathogenic Generalized epilepsy with febrile seizures plus, type 2 2022-05-04 criteria provided, single submitter clinical testing

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