Submissions for variant NM_001195263.2(PDZD7):c.2411C>T (p.Ala804Val)

gnomAD frequency: 0.00172  dbSNP: rs397516635

Total submissions: 4

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Laboratory for Molecular Medicine, Mass General Brigham Personalized Medicine	RCV000037104	SCV000060761	uncertain significance	not specified	2012-12-19	criteria provided, single submitter	clinical testing	Variant classified as Uncertain Significance - Favor Benign. The Ala804Val varia nt in PDZD7 has not been reported in the literature nor previously identified by our laboratory. Computational analyses (biochemical amino acid properties, cons ervation, AlignGVGD, PolyPhen2, and SIFT) suggest that the Ala804Val variant may not impact the protein, though this information is not predictive enough to rul e out pathogenicity. The variant occurs in exon 15 which is only present in an a lternate longer transcript of PDZD7, with the major transcript only encoding 10 exons. Therefore, the impact of any variant in this gene region on biological fu nction is unknown. Furthermore, there is inconclusive evidence as to the role of the PDZD7 gene in hearing loss. There is one case report suggesting PDZD7 could cause nonsyndromic hearing loss based upon a patient with a homozygous transloc ation that disrupts the long alternate isoform of PDZD7 (Schneider 2009). There is one case report suggesting PDZD7 may be a modifier of the severity of Usher s yndrome (Ebermann 2010). However, no biallelic mutations have been found in Ushe r patients to date despite screening in 205 cases (Ebermann 2010, Besnard 2012). In summary, additional data is needed to determine the role of PDZD7 gene disru ption in disease as well as whether the Ala804Val disrupts protein function.
Labcorp Genetics (formerly Invitae), Labcorp	RCV001463957	SCV001667914	likely benign	not provided	2024-12-02	criteria provided, single submitter	clinical testing
GeneDx	RCV001463957	SCV001772316	likely benign	not provided	2020-06-30	criteria provided, single submitter	clinical testing
PreventionGenetics, part of Exact Sciences	RCV004549452	SCV004759907	likely benign	PDZD7-related disorder	2020-02-19	no assertion criteria provided	clinical testing	This variant is classified as likely benign based on ACMG/AMP sequence variant interpretation guidelines (Richards et al. 2015 PMID: 25741868, with internal and published modifications).