ClinVar Miner

Submissions for variant NM_001243133.2(NLRP3):c.1218G>A (p.Met406Ile)

dbSNP: rs180177486
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001377285 SCV001574573 likely pathogenic Cryopyrin associated periodic syndrome 2020-04-28 criteria provided, single submitter clinical testing In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. This variant disrupts the p.Met408 amino acid residue in NLRP3. Other variant(s) that disrupt this residue have been observed in individuals with NLRP3-related conditions (PMID: 21702021, Invitae), which suggests that this may be a clinically significant amino acid residue. Algorithms developed to predict the effect of missense changes on protein structure and function are either unavailable or do not agree on the potential impact of this missense change (SIFT: "Tolerated"; PolyPhen-2: "Probably Damaging"; Align-GVGD: "Class C0"). This variant has been observed in individual(s) with Cryopyrin-associated periodic syndrome (PMID: 16920754, 21637346). This variant is also known as M406I in the literature. This variant is not present in population databases (ExAC no frequency). This sequence change replaces methionine with isoleucine at codon 408 of the NLRP3 protein (p.Met408Ile). The methionine residue is highly conserved and there is a small physicochemical difference between methionine and isoleucine.

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