Submissions for variant NM_001257180.2(SLC20A2):c.933C>T (p.Tyr311=)

gnomAD frequency: 0.00289  dbSNP: rs115902470

Total submissions: 6

Submitter	RCV	SCV	Clinical significance	Condition	Last evaluated	Review status	Method	Comment
Illumina Laboratory Services, Illumina	RCV000318284	SCV000473944	benign	Idiopathic basal ganglia calcification 1	2018-01-12	criteria provided, single submitter	clinical testing	This variant was observed in the ICSL laboratory as part of a predisposition screen in an ostensibly healthy population. It had not been previously curated by ICSL or reported in the Human Gene Mutation Database (HGMD: prior to June 1st, 2018), and was therefore a candidate for classification through an automated scoring system. Utilizing variant allele frequency, disease prevalence and penetrance estimates, and inheritance mode, an automated score was calculated to assess if this variant is too frequent to cause the disease. Based on the score and internal cut-off values, a variant classified as benign is not then subjected to further curation. The score for this variant resulted in a classification of benign for this disease.
Clinical Genetics DNA and cytogenetics Diagnostics Lab, Erasmus MC, Erasmus Medical Center	RCV000318284	SCV000744960	likely benign	Idiopathic basal ganglia calcification 1	2017-06-28	criteria provided, single submitter	clinical testing
Invitae	RCV000860804	SCV001000962	benign	not provided	2024-01-08	criteria provided, single submitter	clinical testing
GeneDx	RCV000860804	SCV001914915	benign	not provided	2019-12-04	criteria provided, single submitter	clinical testing
Diagnostic Laboratory, Department of Genetics, University Medical Center Groningen	RCV000318284	SCV000734609	likely benign	Idiopathic basal ganglia calcification 1		no assertion criteria provided	clinical testing
Genome Diagnostics Laboratory, Amsterdam University Medical Center	RCV000860804	SCV001807091	likely benign	not provided		no assertion criteria provided	clinical testing