ClinVar Miner

Submissions for variant NM_001271.4(CHD2):c.2973G>A (p.Gln991=)

dbSNP: rs903186613
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Total submissions: 3
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Ambry Genetics RCV000624869 SCV000742935 uncertain significance Inborn genetic diseases 2017-11-01 criteria provided, single submitter clinical testing
Fulgent Genetics, Fulgent Genetics RCV000765249 SCV000896496 uncertain significance Developmental and epileptic encephalopathy 94 2022-03-25 criteria provided, single submitter clinical testing
Invitae RCV000765249 SCV002175556 uncertain significance Developmental and epileptic encephalopathy 94 2023-12-06 criteria provided, single submitter clinical testing This sequence change affects codon 991 of the CHD2 mRNA. It is a 'silent' change, meaning that it does not change the encoded amino acid sequence of the CHD2 protein. This variant also falls at the last nucleotide of exon 23, which is part of the consensus splice site for this exon. This variant is not present in population databases (gnomAD no frequency). This variant has been observed in individuals with clinical features of CHD2-related conditions (Invitae). ClinVar contains an entry for this variant (Variation ID: 522068). Variants that disrupt the consensus splice site are a relatively common cause of aberrant splicing (PMID: 17576681, 9536098). Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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