ClinVar Miner

Submissions for variant NM_001278716.2(FBXL4):c.540T>G (p.Pro180=)

gnomAD frequency: 0.00003  dbSNP: rs760238524
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Wong Mito Lab, Molecular and Human Genetics, Baylor College of Medicine RCV000502306 SCV000598295 uncertain significance Mitochondrial DNA depletion syndrome 13 2017-08-10 criteria provided, single submitter reference population The NM_012160.4:c.540T>G (NP_036292.2:p.Pro180=) [GRCH38: NC_000006.12:g.98917692A>C] variant in FBXL4 gene is interpretated to be a Uncertain Significance - Conflicting Evidence based on ACMG guidelines (PMID: 25741868). This variant meets one or more of the following evidence codes reported in the ACMG-guideline. PM2:This variant is absent in key population databases. BP4:Computational evidence/predictors indicate no impact on the FBXL4 structure, function, or protein-protein interaction. BP7:The variant is silent with non predicted splice impact. Based on this evidence code ClinGen Pathogenicity Calculator (PMID:28081714) suggested that the variant is Uncertain Significance - Conflicting Evidence.
Labcorp Genetics (formerly Invitae), Labcorp RCV000961148 SCV001108179 likely benign not provided 2024-01-29 criteria provided, single submitter clinical testing

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