ClinVar Miner

Submissions for variant NM_001283009.2(RTEL1):c.3110-2A>C

dbSNP: rs377461417
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Counsyl RCV000665184 SCV000789257 likely pathogenic Dyskeratosis congenita, autosomal recessive 5 2017-01-19 criteria provided, single submitter clinical testing
Labcorp Genetics (formerly Invitae), Labcorp RCV001377425 SCV001574756 likely pathogenic Dyskeratosis congenita, autosomal recessive 5; Pulmonary fibrosis and/or bone marrow failure, Telomere-related, 3 2023-08-18 criteria provided, single submitter clinical testing In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Algorithms developed to predict the effect of sequence changes on RNA splicing suggest that this variant may disrupt the consensus splice site. ClinVar contains an entry for this variant (Variation ID: 550440). This variant has not been reported in the literature in individuals affected with RTEL1-related conditions. This variant is present in population databases (rs377461417, gnomAD 0.004%). This sequence change affects an acceptor splice site in intron 31 of the RTEL1 gene. It is expected to disrupt RNA splicing. Variants that disrupt the donor or acceptor splice site typically lead to a loss of protein function (PMID: 16199547), and loss-of-function variants in RTEL1 are known to be pathogenic (PMID: 23453664, 23959892, 25607374).
Baylor Genetics RCV000665184 SCV004209346 likely pathogenic Dyskeratosis congenita, autosomal recessive 5 2024-02-12 criteria provided, single submitter clinical testing
Natera, Inc. RCV001829829 SCV002095538 likely pathogenic Dyskeratosis congenita 2021-04-06 no assertion criteria provided clinical testing

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