ClinVar Miner

Submissions for variant NM_001322934.2(NFKB2):c.1972C>T (p.Arg658Trp)

gnomAD frequency: 0.00024  dbSNP: rs200373995
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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV001228613 SCV001401020 uncertain significance Immunodeficiency, common variable, 10 2024-01-31 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 658 of the NFKB2 protein (p.Arg658Trp). This variant is present in population databases (rs200373995, gnomAD 0.02%). This variant has not been reported in the literature in individuals affected with NFKB2-related conditions. ClinVar contains an entry for this variant (Variation ID: 955894). An algorithm developed to predict the effect of missense changes on protein structure and function (PolyPhen-2) suggests that this variant is likely to be disruptive. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
GenomeConnect, ClinGen RCV002508952 SCV002818429 not provided Immunodeficiency, common variable, 1; Immunodeficiency, common variable, 10 no assertion provided phenotyping only Variant classified as Uncertain significance and reported on 10-12-2021 by Lab or GTR ID 500031. GenomeConnect assertions are reported exactly as they appear on the patient-provided report from the testing laboratory. GenomeConnect staff make no attempt to reinterpret the clinical significance of the variant.

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