Total submissions: 1
Submitter | RCV | SCV | Clinical significance | Condition | Last evaluated | Review status | Method | Comment |
---|---|---|---|---|---|---|---|---|
Gene |
RCV000520760 | SCV000618919 | likely pathogenic | not provided | 2017-07-10 | criteria provided, single submitter | clinical testing | A variant that is likely pathogenic has been identified in the SCN8A gene. The L1628W variant has not been published as a pathogenic variant, nor has it been reported as a benign variant to our knowledge. The L1628W variant is not observed in large population cohorts (Lek et al., 2016; 1000 Genomes Consortium et al., 2015; Exome Variant Server). The L1628W variant is a semi-conservative amino acid substitution, which may impact secondary protein structure as these residues differ in some properties. This substitution occurs at a conserved position predicted to be within the transmembrane segment S4 voltage sensor of the fourth homologous domain. In silico analysis predicts this variant is probably damaging to the protein structure/function. However, missense variants in nearby residues have not been reported in the Human Gene Mutation Database in association with SCN8A-related disorders (Stenson et al., 2014). Therefore, this variant is likely pathogenic; however, the possibility that it is benign cannot be excluded. |