ClinVar Miner

Submissions for variant NM_001351132.2(PEX5):c.1419G>T (p.Glu473Asp)

dbSNP: rs1945181377
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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Labcorp Genetics (formerly Invitae), Labcorp RCV001048591 SCV001212604 uncertain significance Peroxisome biogenesis disorder 2B 2021-08-27 criteria provided, single submitter clinical testing This sequence change replaces glutamic acid with aspartic acid at codon 473 of the PEX5 protein (p.Glu473Asp). The glutamic acid residue is weakly conserved and there is a small physicochemical difference between glutamic acid and aspartic acid. This variant is not present in population databases (ExAC no frequency). This variant has not been reported in the literature in individuals affected with PEX5-related conditions. Algorithms developed to predict the effect of missense changes on protein structure and function (SIFT, PolyPhen-2, Align-GVGD) all suggest that this variant is likely to be tolerated. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.

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