ClinVar Miner

Submissions for variant NM_001355436.2(SPTB):c.2711T>C (p.Ile904Thr)

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Total submissions: 1
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Neuberg Centre For Genomic Medicine, NCGM RCV003448799 SCV004176534 uncertain significance Hereditary spherocytosis type 2 2023-02-14 criteria provided, single submitter clinical testing The missense c.2711T>C (p.Ile904Thr) variant in SPTB gene has not been reported previously as a pathogenic variant nor as a benign variant, to our knowledge. The p.Ile904Thr variant is reported with an allele frequency of 0.0004% in the gnomAD exomes database and is novel (not in any individuals) in 1000 Genomes database. This variant has not been reported to the ClinVar database. The amino acid change p.Ile904Thr in SPTB is predicted as conserved by GERP++ and PhyloP across 100 vertebrates. The amino acid Ile at position 904 is changed to a Thr changing protein sequence and it might alter its composition and physico-chemical properties. For these reasons, this variant has been classified as a Variant of Uncertain Significance (VUS).

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