ClinVar Miner

Submissions for variant NM_001360016.2(G6PD):c.595A>G (p.Ile199Val)

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Total submissions: 2
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Dunham Lab, University of Washington RCV002305809 SCV002599411 uncertain significance Anemia, nonspherocytic hemolytic, due to G6PD deficiency 2022-08-12 criteria provided, single submitter curation Normal activity when expressed in S. cerevisiae (BS3_M). Located in substrate binding site (PM1). Below expected carrier frequency in gnomAD (PM2). Post_P 0.325 (odds of pathogenicity 4.33, Prior_P 0.1).
Invitae RCV002305809 SCV004299713 likely pathogenic Anemia, nonspherocytic hemolytic, due to G6PD deficiency 2022-12-28 criteria provided, single submitter clinical testing This sequence change replaces isoleucine, which is neutral and non-polar, with valine, which is neutral and non-polar, at codon 199 of the G6PD protein (p.Ile199Val). In summary, the currently available evidence indicates that the variant is pathogenic, but additional data are needed to prove that conclusively. Therefore, this variant has been classified as Likely Pathogenic. Experimental studies are conflicting or provide insufficient evidence to determine the effect of this variant on G6PD function (PMID: 16193512). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is expected to disrupt G6PD protein function. ClinVar contains an entry for this variant (Variation ID: 1722699). This missense change has been observed in individuals with glucose-6-phosphate dehydrogenase deficiency (PMID: 18056001, 25536053). This variant is present in population databases (rs781865768, gnomAD 0.01%).

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