ClinVar Miner

Submissions for variant NM_001366385.1(CARD14):c.2884C>T (p.Arg962Trp)

gnomAD frequency: 0.00025  dbSNP: rs768891477
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Total submissions: 4
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Submitter RCV SCV Clinical significance Condition Last evaluated Review status Method Comment
Invitae RCV002041722 SCV002113652 uncertain significance Pityriasis rubra pilaris; Psoriasis 2 2023-12-02 criteria provided, single submitter clinical testing This sequence change replaces arginine, which is basic and polar, with tryptophan, which is neutral and slightly polar, at codon 962 of the CARD14 protein (p.Arg962Trp). This variant is present in population databases (rs768891477, gnomAD 0.05%), and has an allele count higher than expected for a pathogenic variant. This variant has not been reported in the literature in individuals affected with CARD14-related conditions. ClinVar contains an entry for this variant (Variation ID: 1347490). Advanced modeling of protein sequence and biophysical properties (such as structural, functional, and spatial information, amino acid conservation, physicochemical variation, residue mobility, and thermodynamic stability) performed at Invitae indicates that this missense variant is not expected to disrupt CARD14 protein function with a negative predictive value of 80%. In summary, the available evidence is currently insufficient to determine the role of this variant in disease. Therefore, it has been classified as a Variant of Uncertain Significance.
Genome Diagnostics Laboratory, The Hospital for Sick Children RCV002264398 SCV002543296 uncertain significance Autoinflammatory syndrome 2020-02-01 criteria provided, single submitter clinical testing
Ambry Genetics RCV003346707 SCV004060270 uncertain significance Inborn genetic diseases 2023-08-08 criteria provided, single submitter clinical testing The c.2884C>T (p.R962W) alteration is located in exon 21 (coding exon 20) of the CARD14 gene. This alteration results from a C to T substitution at nucleotide position 2884, causing the arginine (R) at amino acid position 962 to be replaced by a tryptophan (W). Based on insufficient or conflicting evidence, the clinical significance of this alteration remains unclear.
PreventionGenetics, part of Exact Sciences RCV003911050 SCV004719102 uncertain significance CARD14-related disorder 2023-11-07 criteria provided, single submitter clinical testing The CARD14 c.2884C>T variant is predicted to result in the amino acid substitution p.Arg962Trp. To our knowledge, this variant has not been reported in the literature. This variant is reported in 0.053% of alleles in individuals of African descent in gnomAD (http://gnomad.broadinstitute.org/variant/17-78182013-C-T). Although we suspect that this variant may be benign, at this time, the clinical significance of this variant is uncertain due to the absence of conclusive functional and genetic evidence.

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